Initial release. Migrated Ensembl AnnotationHub and GFF/GTF parsing functions here from the basejump package.
mcolnames, for better consistency with the basejump naming conventions. Note that this formal is currently used by basejump and bcbioSingleCell.
data-raw/scripts used to general minimal GFF example files.
.makeTranscriptsFromEnsemblGTF: Made assert checks less strict. No longer requiring
gene_name, so we can pass through GRanges generated from FlyBase or WormBase.
makeGRangesFromEnsembl: Detect organisms with complex names including 3 words (e.g. Canis lupus familiaris) and automatically sanitize to the 2 word convention used internally by ensembldb (e.g. Canis familiaris). Thanks @umasaxena for the heads up on this.